Uniprot MCP server

by cyanheads·io.github.cyanheads/uniprot-mcp-server·v0.2.3

Protein research over UniProtKB — search by function, fetch curated records, map IDs, proteomes.

What users say

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Safety scan

not scanned yet

Adoption

Not measured yet

Usage numbers are collected on the next scan

Reviews

Nobody has reviewed Uniprot yet.

If you have run it, two minutes of your experience saves the next person an afternoon.

Tool list not cached yet. `describe` through the gateway fetches it live.

Not scanned yet. New registry listings are scanned within a day of import.

claude mcp add --transport http uniprot-mcp-server https://uniprot.caseyjhand.com/mcp

Is Uniprot MCP server safe?: Not known yet: the safety scan has not run. New listings are scanned within a few days.
How do I install Uniprot?: It runs remotely at uniprot.caseyjhand.com. Add it to Claude Code, Claude Desktop or Cursor with the snippets above, or call it through the mcp.market gateway without installing anything.
Does Uniprot need an API key?: No secret keys are declared. It reads 6 settings from the environment.
Is Uniprot maintained?: The latest release is v0.2.3.
Is Uniprot up?: 100% of our last 1 checks got an answer. We check remote servers about four times a day.
What can I use instead of Uniprot?: Servers from other publishers that do the same job: Google Maps MCP Server, Zotero MCP server and Silica Core MCP server. Compare all Uniprot alternatives.

Same job from other publishers: the closest match first, then the best rated.

Google Maps MCP Server
18 Google Maps tools for AI agents — geocode, search, directions, weather, and more.
not reviewed
Established
B
Zotero MCP
Search, read, annotate, and add to your Zotero research library, local or web.
not reviewed
Established
C
Silica Core
Retrieval over the folder the session opened: files, search, read, code_pack, write_note.
not reviewed
Established
A
Minutes
The private, owned conversation-memory layer for AI. Record, transcribe, and search every meeting.
not reviewed
Established
A
Jarvis
Local-first SCIP code navigation and Zoekt search over your own indexed repositories
not reviewed
Growing
A

With the gateway added, ask your agent for it by name:

agent prompt

call io.github.cyanheads/uniprot-mcp-server → <tool>

Free per call. Metered, capped by your key, logged for reliability.

MCP_LOG_LEVELSets the minimum log level for output (e.g., 'debug', 'info', 'warn').
MCP_HTTP_HOSTThe hostname for the HTTP server.
MCP_HTTP_PORTThe port to run the HTTP server on.
MCP_HTTP_ENDPOINT_PATHThe endpoint path for the MCP server.
MCP_AUTH_MODEAuthentication mode to use: 'none', 'jwt', or 'oauth'.
MCP_LOG_LEVELSets the minimum log level for output (e.g., 'debug', 'info', 'warn').

https://uniprot.caseyjhand.com/mcp

streamable-http

Claim it to keep the listing current and reply to reviews. Claiming never changes the grade or hides a review.

Shows the safety grade and links back to this page. It updates itself after every scan and review.

[![mcp.market](https://mcp.market/badge/cyanheads-uniprot-mcp-server.svg)](https://mcp.market/server/cyanheads-uniprot-mcp-server)